Back together.
Blocked off the booster from the IM, and still the same problems, and same brakes were getting warm, so I returned the booster.

While i was there i had them look through the different master cylinder to see if maybe they gave me the wrong one? im sure that would give me issues....

put some other plug wires on from another car..

Also, 1st and second are now harder to get into while downshifting... great..
Sounds to me like the syncs slips out? i dunno.. shifts.. buts its stiff.. only 1 and 2.

Anywho, nightmare continues